Package: NADA2 1.1.8

NADA2: Data Analysis for Censored Environmental Data

Contains methods described by Dennis Helsel in his book "Statistics for Censored Environmental Data using Minitab and R" (2011) and courses and videos at <https://practicalstats.com>. This package adds new functions to the `NADA` Package.

Authors:Paul Julian [aut, cre], Dennis Helsel [aut, cph]

NADA2_1.1.8.tar.gz
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NADA2_1.1.8.tgz(r-4.4-any)NADA2_1.1.8.tgz(r-4.3-any)
NADA2_1.1.8.tar.gz(r-4.5-noble)NADA2_1.1.8.tar.gz(r-4.4-noble)
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NADA2.pdf |NADA2.html✨
NADA2/json (API)
NEWS

# Install 'NADA2' in R:

install.packages('NADA2', repos = c('https://swampthingpaul.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/swampthingpaul/nada2/issues

Datasets:

Brumbaugh - Brumbaugh
Example1 - Example1
Example2 - Example2
Example3 - Example3
Gales_Creek - Gales_Creek
Markers - Markers
PbHeron - PbHeron
Pollen_Thia - Thiamethoxam concentrations in pollen
ReconLogistic - ReconLogistic
TCE2 - TCE2
atrazine - Atrazine concentrations in Nebraska ground water

On CRAN:

43 exports 13 stars 2.20 score 108 dependencies 16 scripts 526 downloads

Last updated 12 days agofrom:74d17f6c31. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 06 2024
R-4.5-win	NOTE	Sep 06 2024
R-4.5-linux	NOTE	Sep 06 2024
R-4.4-win	NOTE	Sep 06 2024
R-4.4-mac	NOTE	Sep 06 2024
R-4.3-win	NOTE	Sep 06 2024
R-4.3-mac	NOTE	Sep 06 2024

Exports:anosimPlot ATS ATSmini bestaic binaryClust binaryDiss binaryMDS binarySim cboxplot cen_ecdf cen_paired cen_signedranktest cen_signtest cen1way cen2means cen2way cenanova cenCompareCdfs cenCompareQQ cencorreg cenperm2 cenpermanova cenPredInt cenQQ cenregQQ censeaken cenTolInt centrend centrendsea cfit computeS equivalent_n kenplot ordranks partplots ppw.test ROSci uMDS Usc Usci uscore uscores uscoresi

Dependencies:abind backports boot broom car carData cenGAM cli cluster codetools coin colorspace commonmark corrplot cowplot cpp11 curl data.table Deriv doBy dplyr EnvStats evaluate exactRankTests fansi farver fitdistrplus generics ggplot2 ggpubr ggrepel ggsci ggsignif ggtext glue gridExtra gridtext gtable highr isoband jpeg Kendall km.ci KMsurv knitr labeling lattice libcoin lifecycle lme4 magrittr markdown MASS Matrix MatrixModels matrixStats maxstat mgcv microbenchmark minqa modelr modeltools multcomp munsell mvtnorm NADA nlme nloptr nnet nortest numDeriv pbkrtest perm permute pillar pkgconfig png polynom purrr quantreg R6 RColorBrewer Rcpp RcppEigen rlang rstatix sandwich scales SparseM stringi stringr survival survminer survMisc TH.data tibble tidyr tidyselect utf8 vctrs vegan viridisLite withr xfun xml2 xtable yaml zoo

Censored Data Analysis

Dennis Helsel and Paul Julian

Rendered fromCensored_Data_Analysis.Rmdusingknitr::rmarkdownon Sep 06 2024.

Last update: 2024-09-06
Started: 2023-09-11

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Permutation Analysis of Similarity (anosim) for Censored Data	anosimPlot
Atrazine concentrations in Nebraska ground water	atrazine
Akritas-Theil-Sen line for censored data	ATS
Kendall's tau and ATS line for censored data	ATSmini
Find the lowest AIC multiple regression model	bestaic
Cluster Matrix of Binary Censored Data	binaryClust
Binary dissimilarity coefficient matrix	binaryDiss
Plot Nonmetric Multidimensional Scaling of binary censored data	binaryMDS
Binary similarity coefficient matrix	binarySim
Brumbaugh	Brumbaugh
Draws censored boxplots	cboxplot
Censored Empirical Cumulative Distribution Function	cen_ecdf
Censored data paired t-test	cen_paired
Wilcoxcon Signed-Rank test for censored data	cen_signedranktest
Sign test for censored data	cen_signtest
Peto-Peto one-factor test	cen1way
Censored data two-group test for difference in means	cen2means
Parametric Two Factor Fixed Effects ANOVA for censored data	cen2way
ANOVA for censored data	cenanova
Comparison of empirical cdf of censored data	cenCompareCdfs
Censored Q-Q Plot comparison	cenCompareQQ
Correlation and Regression with censored data	cencorreg
Censored two-group permutation test	cenperm2
Censored data one-factor permutation test	cenpermanova
Prediction interval for censored data	cenPredInt
Q-Q Plot censored data	cenQQ
Q-Q plot of censored regression residuals	cenregQQ
Seasonal Kendall permutation test on censored data	censeaken
Upper Tolerance interval for censored data	cenTolInt
Trend analysis of censored data with a covariate	centrend
Trend analysis of censored data with a covariate and seasonal blocks	centrendsea
Compute an ECDF and Distribution Parameters for Censored Data	cfit
Kendall's S-statistic for permutations of censored data	computeS
Censored data sample size	equivalent_n
Example1	Example1
Example2	Example2
Example3	Example3
Gales_Creek	Gales_Creek
Plot robust median ATS line for censored data	kenplot
Markers	Markers markers
Computes ranks of data with one or multiple detection limits	ordranks
Partial plots for censored MLE regression	partplots
PbHeron	PbHeron
Thiamethoxam concentrations in pollen	Pollen_Thia
Test for difference in left-censored samples	ppw.test
ReconLogistic	ReconLogistic
Computes confidence intervals on regression on order statistics (ROS) mean	ROSci
TCE2	TCE2
Plot U-score Nonmetric Multidimensional Scaling of censored data	uMDS
U-scores for (non-interval, sinle-column) Censored Data	Usc
Interval-censored U-Score	Usci
U-score (individual value)	uscore
Uscores for multiple columns of censored data	uscores
U-scores for interval-censored data (multiple columns)	uscoresi